# Catalax

> Biochemical modelling with JAX

## Docs

- [Welcome to Catalax 🧬⚡](https://catalax-equation-inits.mintlify.site/welcome.md)
- [Model Definition](https://catalax-equation-inits.mintlify.site/basic/model-class.md)
- [Kinetic Laws](https://catalax-equation-inits.mintlify.site/basic/kinetic-laws.md)
- [Simulation](https://catalax-equation-inits.mintlify.site/basic/simulation.md)
- [Data Management](https://catalax-equation-inits.mintlify.site/basic/data-management.md)
- [Parameter Estimation](https://catalax-equation-inits.mintlify.site/basic/parameter-opt.md)
- [Hamiltonian Monte Carlo](https://catalax-equation-inits.mintlify.site/hmc/mcmc-basic.md)
- [Extending Bayesian Models](https://catalax-equation-inits.mintlify.site/hmc/pre-post-models.md)
- [Surrogate-Accelerated HMC](https://catalax-equation-inits.mintlify.site/hmc/surrogate-hmc.md)
- [Neural ODE Training](https://catalax-equation-inits.mintlify.site/neural/neural-ode.md)
- [Universal ODE Training](https://catalax-equation-inits.mintlify.site/neural/universal-ode.md)
- [RateFlow ODE Training](https://catalax-equation-inits.mintlify.site/neural/rateflow-ode.md)
- [Regularization](https://catalax-equation-inits.mintlify.site/neural/neural-regularization.md)

## Optional

- [Examples](https://github.com/JR-1991/Catalax/tree/master/examples)